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TCRMP 2012: annual report, part 1

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Research & Technical Reports
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Government Report
Date
2012
Pages
32
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ANNUAL REPORT 2012 Smith TB, Kadison E, Henderson L, Gyory J, Brandt ME, Wright V, Nemeth RS, Rothenberger P The United States Virgin Islands TERRITORIAL CORAL REEF MONITORING PROGRAM A collaboration between: The Center for Marine and Environmental Studies, University of the Virgin Islands The Division of Coastal Zone Management, USVI Department of Planning and Natural Resources The Coral Reef Conservation Program, National Oceanic and Atmospheric Administration INDEX i © 2012 Cite As: Smith TB, Kadison E, Henderson L, Gyory J, Brandt ME, Wright V, Nemeth RS, Rothenberger P (2012) The United States Virgin Islands Territorial Coral Reef Monitoring Program. Year 12 Annual Report. …

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ANNUAL  REPORT   2012   Smith  TB,  Kadison  E,  Henderson  L,  Gyory  J,  Brandt  ME,  Wright  V,   Nemeth  RS,  Rothenberger  P   The  United  States  Virgin  Islands   TERRITORIAL  CORAL  REEF  MONITORING  PROGRAM   A  collaboration  between:   The  Center  for  Marine  and  Environmental  Studies,  University  of  the  Virgin  Islands           The  Division  of  Coastal  Zone  Management,  USVI  Department  of  Planning  and   Natural  Resources           The  Coral  Reef  Conservation  Program,  National  Oceanic  and  Atmospheric   Administration   INDEX     i                                 ©  2012   Cite  As:    Smith  TB,  Kadison  E,  Henderson  L,  Gyory  J,  Brandt  ME,  Wright  V,  Nemeth  RS,   Rothenberger  P  (2012)    The  United  States  Virgin  Islands  Territorial  Coral  Reef   Monitoring  Program.  Year  12  Annual  Report.    Version  1    267  pp     INDEX         ii     INDEX  OF  TABLES   XII   MISSION   13   OUR  VISION   13   OBJECTIVES   13   EXECUTIVE  SUMMARY   14   CORAL  REEFS  OF  THE  VIRGIN  ISLANDS:  MANGEMENT  ACTIONS  NEEDED   14   CORAL  REEFS  OF  THE  VIRGIN  ISLANDS:  POSITIVE  SIGNS   16   RESEARCH  HIGHLIGHTS   20   BLEACHING  RESISTANT  SPECIES  IN  THE  CARIBBEAN  AND  IMPLICATIONS  FOR  CORAL  REEF   MANAGEMENT   21   RECOMMENDATIONS   23   INTRODUCTION   25   OBJECTIVES  FOR  MONITORING  CORAL  REEFS   28   METHODS   30   BENTHIC  ASSESSMENTS   30   FISH  CENSUS   36   TERRITORIAL  CORAL  REEF  MONITORING  SUMMARY   37   BENTHIC  COMMUNITIES  AND  CORAL  REEF  HEALTH   38   CORAL  COVER   38   EPILITHIC  ALGAL  COMMUNITY  COVER   40   MACROALGAL  COVER   42   FILAMENTOUS  CYANOBACTERIA   44   GORGONIAN  AND  ANTIPATHARIAN  COVER   46   INDEX     iii   SPONGE  COVER   48   FISH  COMMUNITIES   50   FISH  ABUNDANCE   52   FISH  BIOMASS   54   BLACK  SPINY  SEA  URCHIN  DIADEMA  ANTILLARUM   56   SITE  SUMMARIES   58   RATIONALE   58   SITE  SUMMMARY  ELEMENTS   58   ST.  CROIX   61   BUCK  ISLAND,  ST.  CROIX   63   CANE  BAY   69   CANE  BAY  DEEP   75   CASTLE   81   EAGLE  RAY   87   GREAT  POND   93   JACKS  BAY   99   KINGS  CORNER   105   LANG  BANK  EAST  END  MARINE  PARK   111   LANG  BANK  RED  HIND  FISH  SPAWNING  AGGREGATION   117   MUTTON  SNAPPER   123   SALT  RIVER  WEST   129   SALT  RIVER  DEEP   135   SPRAT  HOLE   141   ST.  JOHN   147   CORAL  BAY   149   FISH  BAY   155   MERI  SHOAL   161   INDEX         iv     ST.  THOMAS   167   BLACK  POINT   169   BOTANY  BAY   175   BREWERS  BAY   181   BUCK  ISLAND,  ST.  THOMAS   187   COCULUS  ROCK   193   COLLEGE  SHOAL   199   FLAT  CAY   205   GINSBURGS  FRINGE   211   GRAMMANIK  TIGER   215   HIND  BANK   221   LITTLE  SAINT  JAMES   227   MAGENS  BAY   233   SAVANA  ISLAND   239   SEAHORSE  COTTAGE  SHOAL   245   SOUTH  CAPELLA   251   SOUTH  WATER   257   LITERATURE  CITED   263   INDEX     v   Index  of  Figures   Figure  1.    Partially  bleached  and  recovering  colony  of  Siderastrea  siderea  at  Flat  Cay,  St.  Thomas  (Nov.  12,   2005).  .................................................................................................................................................................................................................  15   Figure  2.    Bleaching  of  Orbicella  faveolata  and  O.  annularis  at  Flat  Cay,  St.  Thomas  (Nov.  12,  2005).  ..................  21   Figure  3.    The  multi-­‐faceted  response  of  Orbicella  spp.  to  the  2005  bleaching  event.  ....................................................  24   Figure  4.    Locations  of  Territorial  Coral  Reef  Monitoring  Sites  in  the  US  Virgin  Islands,  2008-­‐2010.Boundaries   indicate  federal  and  territorial  marine  protected  areas.  ............................................................................................................  29   Figure  5.    A  screen  grab  of  benthic  video  used  for  the  determination  of  percent  cover  of  coral  reef  organisms   and  non-­‐living  substrate.  ...........................................................................................................................................................................  32   Figure  6.    Coral  cover  (±SE)  across  TCRMP  monitoring  sites  over  time.  ..............................................................................  39   Figure  7.    Epilithic  algal  community  cover  (±SE)  across  TCRMP  monitoring  sites  over  time.  ....................................  41   Figure  8.    Macroalgae  cover  (±SE)  across  TCRMP  monitoring  sites  over  time.  .................................................................  43   Figure  9.    Filamentous  cyanobacteria  cover  (±SE)  across  TCRMP  monitoring  sites  over  time.  .................................  45   Figure  10.    Gorgonian  and  Antipatharian  cover  (±SE)  across  TCRMP  monitoring  sites  over  time.  .........................  47   Figure  11.    Sponge  cover  (±SE)  across  TCRMP  monitoring  sites  over  time.  ........................................................................  49   Figure  12.    Fish  abundance  (±SE)  across  TCRMP  monitoring  sites  over  time.  Dotted  line  separates  St.  Croix   sites  (left)  from  St.  Thomas  (right).  ......................................................................................................................................................  53   Figure  13.    Mean  fish  biomass  (±SE)  across  TCRMP  monitoring  sites  over  time.  Dotted  line  separates  St.  Croix   sites  (left)  from  St.  Thomas  (right).  ......................................................................................................................................................  55   Figure  14.    Abundance  of  the  black  spiny  sea  urchin  (Diadema  antillarum)  at  TCRMP  monitoring  sites.    Note   the  log  scale.  ....................................................................................................................................................................................................  57   Figure  15.    The  Buck  Island,  St.  Croix.  (top)  Position  in  the  Buck  Island  Reef  National  Monument.    (right)A   representative  photo.  ..................................................................................................................................................................................  63   Figure  16.    Buck  Island,  St.  Croix  benthic  temperatures  (14  m  depth).    Data  provided  by  the  National  Park   Service  (site  BUIS_SFR).  .............................................................................................................................................................................  64   Figure  17.    Buck  Island,  St.  Croix.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.     (right)  Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ....................................................  65   Figure  18.    Buck  Island,  St.  Croix  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .....................................  66   Figure  19.    The  Buck  Island,  St.  Croix  fish  community  by  absolute  and  relative  biomass.  ............................................  68   Figure  20.    Cane  Bay.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  ...........................................................  69   Figure  21.    Cane  Bay  benthic  temperatures  (8  m  depth)  ............................................................................................................  70   INDEX         vi     Figure  22.    Cane  Bay.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)  Relative   composition  of  the  algal  community  and  unconsolidated  sediment.  .....................................................................................  71   Figure  23.    Cane  Bay  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .............................................................  72   Figure  24.    The  Cane  Bay  fish  community  by  absolute  and  relative  biomass.  ....................................................................  74   Figure  25.    Cane  Bay  Deep.  (top)  Location.    (right)  A  representative  photo  of  the  reef  during  the  2005   bleaching  event.    Bleached  colonies  are  0.5  –  3  m  wide.  ..............................................................................................................  75   Figure  26.    Cane  Bay  Deep  temperature  (39  m  depth).  ................................................................................................................  76   Figure  27.    Cane  Bay  Deep.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ...................................................................  77   Figure  28.    Cane  Bay  Deep  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .................................................  78   Figure  29.    The  Cane  Bay  Deep  fish  community  by  absolute  and  relative  biomass.  ........................................................  80   Figure  30.    Castle.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  ..................................................................  81   Figure  31.    Castle  benthic  temperatures  (9  m  depth).  ..................................................................................................................  82   Figure  32.    Castle.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)  Relative   composition  of  the  algal  community  and  unconsolidated  sediment.  .....................................................................................  83   Figure  33.    Castle  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ....................................................................  84   Figure  34.    The  Castle  fish  community  by  absolute  and  relative  biomass.  ...........................................................................  86   Figure  35.    Eagle  Ray.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  ..........................................................  87   Figure  36.    Eagle  Ray  benthic  temperature  at  9  m  depth  ...........................................................................................................  88   Figure  37.    Eagle  Ray.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)  Relative   composition  of  the  algal  community  and  unconsolidated  sediment.  .....................................................................................  89   Figure  38.    Eagle  Ray  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ............................................................  90   Figure  39.    The  Eagle  Ray  fish  community  by  absolute  and  relative  biomass.  ...................................................................  92   Figure  40.    Great  Pond.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  .......................................................  93   Figure  41.    Great  Pond  benthic  temperature  (5  m  depth).  .........................................................................................................  94   Figure  42.    Great  Pond  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)  Relative   composition  of  the  algal  community  and  unconsolidated  sediment.  .....................................................................................  95   Figure  43.    Great  Pond  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .........................................................  96   Figure  44.    The  Great  Pond  fish  community  by  absolute  and  relative  biomass.  ................................................................  98   Figure  45.    Jacks  Bay.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  ...........................................................  99   Figure  46.    Jacks  Bay  benthic  temperature  at  12  m  depth  .......................................................................................................  100   Figure  47.    Jacks  Bay  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)  Relative   composition  of  the  algal  community  and  unconsolidated  sediment.  ..................................................................................  101   INDEX     vii   Figure  48.    Jacks  Bay  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .........................................................  102   Figure  49.    The  Jacks  Bay  fish  community  by  absolute  and  relative  biomass.  ................................................................  104   Figure  50.    Kings  Corner.  (top)  Location.    (right)  A  representative  photo  of  the  reef  with  a  school  of  lane   snapper  (Lutjaus  synagris).  ...................................................................................................................................................................  105   Figure  51.    Kings  Corner  benthic  temperature  (17  m  depth)  .................................................................................................  106   Figure  52.    Kings  Corner  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  107   Figure  53.    Kings  Corner  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ..................................................  108   Figure  54.    The  Kings  Corner  fish  community  by  absolute  and  relative  biomass.  .........................................................  110   Figure  55.    Lang  Bank  EEMP.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  ........................................  111   Figure  56.    Lang  Bank  EEMP  benthic  temperature  (28  m  depth)  ........................................................................................  112   Figure  57.    Lang  Bank  East  End  Marine  Park  (left)  Relative  composition  of  the  sessile  epibenthic  animal   community.    (right)  Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ......................  113   Figure  58.    Lang  Bank  EEMP  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .........................................  114   Figure  59.    The  Lang  Bank  EEMP  fish  community  by  absolute  and  relative  biomass.  ................................................  116   Figure  60.    Lang  Bank  Red  Hind  FSA.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  ........................  117   Figure  61.    Lang  Bank  Hind  current  speed  (left)  and  benthic  temperature  (right;  33m  depth)  ............................  118   Figure  62.    Lang  Bank  Red  Hind  FSA  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.     (right)  Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  .................................................  119   Figure  63.    Lang  Bank  Red  HindFSA  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ...........................  120   Figure  64.    The  Lang  Bank  Red  Hind  FSA  fish  community  by  absolute  and  relative  biomass.  .................................  122   Figure  65.    Mutton  Snapper.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  ..........................................  123   Figure  66.    Mutton  Snapper  benthic  temperature  record  at  23  m  (left)  and  39  m  depth  (right).  .........................  124   Figure  67.    Mutton  Snapper  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  125   Figure  68.    Mutton  Snapper  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ...........................................  126   Figure  69.    The  Mutton  Snapper  fish  community  by  absolute  and  relative  biomass.  ..................................................  128   Figure  70.    Salt  River.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  .......................................................  129   Figure  71.    Salt  River  West  surface-­‐benthic  temperature  record  (1  and  5m  depths).    Data  provided  by  the   NOAA  ICON  monitoring  network.  .......................................................................................................................................................  130   Figure  72.    Salt  River  West  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  131   Figure  73.    Salt  River  West  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ..............................................  132   INDEX         viii   Figure  74.    The  Salt  River  West  fish  community  by  absolute  and  relative  biomass.  .....................................................  134   Figure  75.    Salt  River  Deep.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  ............................................  135   Figure  76.    Salt  River  Deep  benthic  temperature  at  30  m  depth  (left)  and  40  m  depth  (right).  .............................  136   Figure  77.    Salt  River  Deep  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  137   Figure  78.    Salt  River  Deep  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .............................................  138   Figure  79.    The  Salt  River  Deep  fish  community  by  absolute  and  relative  biomass.  ....................................................  140   Figure  80.    Sprat  Hole.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  .....................................................  141   Figure  81.    Sprat  Hole  benthic  temperature  (7  m  depth).  ........................................................................................................  142   Figure  82.    Sprat  Hole  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)  Relative   composition  of  the  algal  community  and  unconsolidated  sediment.  ..................................................................................  143   Figure  83.    Sprat  Hole  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .......................................................  144   Figure  84.    The  Sprat  Hole  fish  community  by  absolute  and  relative  biomass.  ..............................................................  146   Figure  85.    Coral  Bay.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  .......................................................  149   Figure  86.    Coral  Bay  benthic  temperature  (9  m  depth)  ..........................................................................................................  150   Figure  87.    Coral  Bay  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)  Relative   composition  of  the  algal  community  and  unconsolidated  sediment.  ..................................................................................  151   Figure  88.    Coral  Bay  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .........................................................  152   Figure  89.    Coral  Bay.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  .......................................................  155   Figure  90.    Fish  Bay  benthic  temperature  record  (6m  depth).  ..............................................................................................  156   Figure  91.    Fish  Bay  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)  Relative   composition  of  the  algal  community  and  unconsolidated  sediment.  ..................................................................................  157   Figure  92.    Fish  Bay  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ............................................................  158   Figure  93.    Meri  Shoal.  (top)  Location.    (right)  A  representative  photo  of  the  reef  during  the  2005  coral   bleaching  event  (Oct.  6,  2005).        The  brain  coral  in  the  foreground  is  1.8m  wide.  .......................................................  161   Figure  94.    Meri  Shoal  benthic  temperature  record  (30m  depth).  .......................................................................................  162   Figure  95.    Meri  Shoal  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)  Relative   composition  of  the  algal  community  and  unconsolidated  sediment.  ..................................................................................  163   Figure  96.    Meri  Shoal  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .......................................................  164   Figure  97.    Black  Point.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  ...................................................  169   Figure  98.    Black  point  current  speed  and  benthic  temperature  record  (8  m  depth).  .................................................  170   Figure  99.    Black  Point  chlorophyll  (left)  and  turbidity  (right)  record  (16  m  depth)  .................................................  170   INDEX     ix   Figure  100.    Black  Point.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  171   Figure  101.    Black  Point  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ...................................................  172   Figure  102.    The  Black  Point  fish  community  by  absolute  and  relative  biomass.  ..........................................................  174   Figure  103.    Botany  Bay.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  .................................................  175   Figure  104.    Botany  Bay  benthic  temperature  record  (11  m  depth).  ..................................................................................  176   Figure  105.    A  large  colony  of  pillar  coral  (Dendrogyra  cylindricus)  dislodge,  toppled,  and  diseased  after  the   2009  swell  event  (Botany  Bay,  June  25,  2009).  .............................................................................................................................  176   Figure  106.    Botany  Bay.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  177   Figure  107.    Botany  Bay  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ...................................................  178   Figure  108.    Brewers  Bay.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  ...............................................  181   Figure  109.    Brewers  Bay.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  183   Figure  110.    Brewers  Bay  benthic  cover  and  coral  health  through  time  (mean  ±SE)  .................................................  184   Figure  111.    The  Brewers  Bay  fish  community  by  absolute  and  relative  biomass.  .......................................................  186   Figure  112.    Buck  Island,  St.  Thomas.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  .......................  187   Figure  113.    Buck  Island,  St.  Thomas  benthic  temperature  record  (12  m  depth).  ........................................................  188   Figure  114.      Buck  Island,  St.  Thomas.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.     (right)  Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  .................................................  189   Figure  115.    Buck  Island,  St.  Thomas  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .........................  190   Figure  116.    Coculus  Rock.  (top)  Location.    (right)  A  representative  photo  of  the  reef  showing  the  aggregation   of  redfin  parrotfish.  ...................................................................................................................................................................................  193   Figure  117.    Coculus  Rock  benthic  temperature  record  (7m  depth).  ..................................................................................  194   Figure  118.    Coculus  Rock.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  195   Figure  119.    Coculus  Rock  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ...............................................  196   Figure  120.    College  Shoal.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  .............................................  199   Figure  121.College  Shoal  benthic  temperature  record  (29m  depth).  .................................................................................  200   Figure  122.    College  Shoal  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  201   Figure  123.    College  Shoal  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ...............................................  202   Figure  124.    The  College  Shoal  fish  community  by  absolute  and  relative  biomass.  ......................................................  204   INDEX         x   Figure  125.    Flat  Cay.  (top)  Location.    (right)  A  representative  photo  of  the  reef.  ........................................................  205   Figure  126.    Flat  Cay  benthic  current  speed  (left)  and  temperature  record  (right)  (14m  depth).  ........................  206   Figure  127.    Flat  Cay  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)  Relative   composition  of  the  algal  community  and  unconsolidated  sediment.  ..................................................................................  207   Figure  128.    Flat  Cay  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .........................................................  208   Figure  129.    The  Flat  Cay  fish  community  by  absolute  and  relative  biomass.  ................................................................  210   Figure  130.    Ginsburgs  Fringe.  (top)  Location.    (right)  A  representative  photo  of  the  reef  showing  whorled   lettuce  coral  colonies  up  to  7m  in  width.  .........................................................................................................................................  211   Figure  131.    Ginsburgs  Fringe  current  speed  (50m  depth).  ....................................................................................................  212   Figure  132.    Ginsburgs  Fringe.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  213   Figure  133.    Ginsburgs  Fringe  benthic  cover  through  time  (mean  ±SE).  ..........................................................................  214   Figure  134.    Grammanik  Tiger  (top)  Location.    (right)    A  representative  photo  of  the  reef.  ....................................  215   Figure  135.    Grammanik  Tiger  benthic  currents  speed  and  temperature  record  (38  m  depth).  ............................  216   Figure  136.    Grammanik  Tiger  FSA.    (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.     (right)  Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  .................................................  217   Figure  137.    Grammanik  Tiger  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .....................................  218   Figure  138.    The  Grammanik  Tiger  fish  community  by  absolute  and  relative  biomass.  ............................................  220   Figure  139.      Hind  Bank  (top)  Location.    (right)    A  representative  photo  of  the  reef.  .................................................  221   Figure  140.    Hind  Bank  benthic  current  speed  (40m  depth).    Benthic  temperature  record  at  20,  30,  and  40  m   depth.  ...............................................................................................................................................................................................................  222   Figure  141.    Hind  Bank.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  223   Figure  142.    Hind  Bank  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .....................................................  224   Figure  143.    The  Hind  Bank  East  fish  community  by  absolute  and  relative  biomass.  .................................................  226   Figure  144.    Little  St.  James.  (top)  Location.    (right)    A  representative  photo  of  the  reef.  .........................................  227   Figure  145.    Little  St.  James  benthic  temperature  record  (19m  depth).  ............................................................................  228   Figure  146.    Little  St.  James.    (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  229   Figure  147.    Little  St.  James  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ............................................  230   Figure  148.    Magens  Bay.  (top)  Location.    (right)    A  representative  photo  of  the  reef.  ...............................................  233   Figure  149.    Magens  Bay  current  speed  and  benthic  temperature  record  (9  m  depth).  ............................................  234   Figure  150.    Magens  Bay  chlorophyll  (left)  and  turbidity  (right)  record  (16  m  depth).  ............................................  234   INDEX     xi   Figure  151.    Magens  Bay.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  235   Figure  152.    Magens  Bay  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .................................................  236   Figure  153.    Savana.  (top)  Location.    (right)    A  representative  photo  of  the  reef  during  the  2005  coral   bleaching  event.    The  dog  snapper  Lutjanus  jocu)  is  approximately  50cm  in  length.  .................................................  239   Figure  154.    Savana  benthic  temperature  record  (10m  depth).  ...........................................................................................  240   Figure  155.    Savana  Island.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  241   Figure  156.    Savana  Island  benthic  cover  and  coral  health  through  time  (mean  ±SE).  .............................................  242   Figure  157.    Seahorse  Cottage  Shoal.  (top)  Location.  (right)    A  representative  photo  of  the  reef.  ........................  245   Figure  158.    Seahorse  benthic  temperature  record  (21m  depth).  ........................................................................................  246   Figure  159.    Seahorse  Cottage  Shoal.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.     (right)  Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  .................................................  247   Figure  160.    Seahorse  Cottage  Shoal  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ..........................  248   Figure  161.    The  Seahorse  Cottage  Shoal  fish  community  by  absolute  and  relative  biomass.  .................................  250   Figure  162.    South  Capella.  (top)  Location.    (right)    A  representative  photo  of  the  reef.  ...........................................  251   Figure  163.    South  Capella  benthic  temperature  record  (24m  depth).  ..............................................................................  252   Figure  164.    South  Capella.  (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  253   Figure  165.    South  Capella  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ..............................................  254   Figure  166.    The  South  Capella  fish  community  by  absolute  and  relative  biomass.  .....................................................  256   Figure  167.South  Water.  (top)  Location.    (right)    A  representative  photo  of  the  reef.  ................................................  257   Figure  168.    South  Water  benthic  temperature  record  (24m  depth)  ..................................................................................  258   Figure  169.    South  Water.    (left)  Relative  composition  of  the  sessile  epibenthic  animal  community.    (right)   Relative  composition  of  the  algal  community  and  unconsolidated  sediment.  ................................................................  259   Figure  170.    South  Water  benthic  cover  and  coral  health  through  time  (mean  ±SE).  ................................................  260   Figure  171.    The  South  Water  fish  community  by  absolute  and  relative  biomass.  .......................................................  262     INDEX         xii   Index  of  Tables   Table  1.    TCRMP  site  reef  complex  type,  location  coordinates,  and  depths.    FSA  =  Fish  Spawning  Aggregation.     EEMP  =  East  End  Marine  Park.  ...............................................................................................................................................................  33   Table  2.    TCRMP  site  date  sampled  (benthic/health)  and  type  of  sampling.  ......................................................................  34   Table  3.    Species  richness  across  sites  in  belt  transects  and  roving  diver  surveys  (RDS).  Sites  are  divided  into   nearshore,  offshore  and  mesophotic  sites  as  described  in  the  text  above.  ...........................................................................  51   MISSION  STATEMENT     13   Mission               OUR  VISION     To  provide  critical  information  on  the  status  and  threats  to  all  Virgin   Islands  coral  reef  ecosystems  in  order  to  increase  management   effectiveness  and  improve  basic  and  applied  coral  reef  research   OBJECTIVES   • Monitor  the  status  and  trajectories  of  coral  reefs  across  a  majority  of  habitats   and  threats,  including  land-­‐based  sources  of  pollution  &  thermal  stress   • Link  changes  in  coral  reef  health  with  specific  stressors,  indicating  specific   management  interventions  most  effective  for  preserving  reefs   • Integrate  assessments  of  understudied  mesophotic  coral  reef  ecosystems  and   threatened  species  in  the  USVI   • Provide  data,  outputs,  and  advice  to  stakeholders  and  create  a  nexus  of   information  for  reef  research EXECUTIVE  SUMMARY         14     Executive  Summary   Coral  reefs  in  the  Caribbean  are  facing  a  dramatic  decline  and  are  at  a  crossroads.   Management  decisions  made  today  will  affect  the  goods  and  services  that  reefs  provide   for  decades  to  come.    The  government  of  the  United  States  Virgin  Islands  (USVI),  in   coordination  with  the  NOAA  Coral  Reef  Conservation  Program  and  the  University  of  the   Virgin  Islands,  implemented  the  Territorial  Coral  Reef  Monitoring  Program  (TCRMP).   The  TCRMP  has  established  baseline  conditions  and  temporal  trends  of  coral  reefs  and   fish  populations  and  has  identified  threats  that  will  influence  the  future  reef  health  and   development.     A  major  focus  of  the  TCRMP  is  to  provide  information  that  can  lead  to  more  effective   management  strategies  that  balance  the  immediate  needs  of  the  Virgin  Island’s   population  with  preservation  and  sustainability  of  coral  reefs  and  the  renewable   goods  and  services  they  provide.   The  intent  of  this  report  is  to  distill  monitoring  data  into  actionable  information  that  can   guide  management  decisions  and  inform  the  public  and  policy-­‐makers  on  areas  that  need   further  effort.    This  executive  summary  presents  information  on  threats  to  USVI  reefs  that   require  management  intervention/action  as  well  as  positive  signs  that  can  inform  our   understanding  of  sustainability.   CORAL  REEFS  OF  THE  VIRGIN  ISLANDS:  MANGEMENT  ACTIONS  NEEDED   The  TCRMP  data  has  identified  threats  to  USVI  coral  reef  ecosystems  that  need  increased   management  attention  if  reef  corals  are  to  persist  in  a  condition  that  is  equal  to  or  better   than  current  conditions.   Coral  Reef  Bleaching.    High  thermal  stress  caused  by  climate  change  is  currently  the   greatest  threat  to  USVI  coral  reef  ecosystems.    The  2005  coral  bleaching  event  caused  the   EXECUTIVE  SUMMARY     15   largest  loss  of  coral  in  the  documented  history  of  the  USVI,  with  a  50%  decline  in  coral   cover  in  shallow  waters  less  than  25m/85’  deep.    This  event  surpassed  all  known  modern   impacts  from  physical  damage  (storms  and  anchoring),  ecosystem  changes  (fishing  and   disease),  and  pollution  (terrestrial  sediments  and  toxins).    These  events  are  predicted  to   increase  with  a  warming  planet,  troubling  news  for  the  USVI   While  local  management  actions  cannot  remove  impacts  to  reefs  from  global  warming,   reefs  that  are  otherwise  less  stressed  by  land-­‐based  sources  of  pollution,  fishing,  and/or   physical  damage  are  known  to  recover  more  quickly  from  bleaching.    Hence,  local   management  actions  that  promote  seascape-­‐wide  coral  reef  health  offer  the  best  strategy   for  sustainable  reefs.    We  can  also  identify  areas  that  are  naturally  more  resistant  to   thermal  stress  and  offer  these  areas  further  protection,  since  they  offer  insurance  against   the  worst  possible  future  outcomes  for  USVI  reefs.   Figure  1.    Partially  bleached   and  recovering  colony  of   Siderastrea  siderea  at  Flat  Cay,   St.  Thomas  (Nov.  12,  2005).     EXECUTIVE  SUMMARY         16     Overfishing.    There  are  clear  indications  that  reefs  of  the  USVI  are  suffering  the  effects  of   overexploitation  of  reef  resources,  although  there  are  also  positive  signs.    The  entire   district  of  St.  Croix  has  an  extremely  low  abundance  of  commercially  important  grouper   species,  including  the  threatened  Nassau  grouper.    In  St.  John  and  St.  Thomas,  many   common  species  have  completely  or  nearly  disappeared  from  nearshore  waters  in  the   last  30  years.    For  example,  a  study  conducted  by  Rogers  et  al.  (1982)  on  the  southwest   coast  of  St.  Thomas  during  the  airport  runway  expansion  (1979-­‐1981)  found  a  variety  of   species  that  are  no  longer  encountered  or  are  rare,  including  the  black,  Nassau,  tiger,  and   yellowfin  groupers,  as  well  as  the  federally  protected  parrotfish  species  blue,  midnight,   and  rainbow.    A  study  by  Randall  (1963)  also  found  high  relative  abundances  of  groupers   and  threatened  parrotfish  on  the  south  coast  of  St.  John.    Rebuilding  these  fish  stock  will   require  comprehensive  life-­‐history  information  for  target  species,  a  willingness  to  find   strategies  to  rebuild  stocks,  and  partnerships  between  commercial  and  recreational   fishers,  community  stakeholders  and  managers.   Land-­‐Based  Source  of  Pollu/on.    The  steep  hillsides  of  the  USVI  are  natural  conduits  for   run-­‐off  during  heavy  rain  events  and  in  many  instances  there  is  little  interception  of   materials  before  they  reach  the  sea  and  impact  coral  reefs.    When  tropical  soils  are   naturally  disturbed  or  through  the  actions  of  man,  they  can  erode  and  release  fine-­‐ grained  silt  and  clay  particles.    In  the  USVI,  these  fine-­‐grained  particles  are  quickly   transported  to  coral  reefs  where  they  can  block  sunlight,  directly  smother  corals,  or   increase  the  growth  organisms  that  compete  with  corals  for  space.    There  is  evidence   from  the  TCRMP  that  terrestrial  sediments  are  having  large  negative  impacts  on   nearshore  coral  reefs  by  increasing  mortality  of  ecologically  important  corals.   CORAL  REEFS  OF  THE  VIRGIN  ISLANDS:  POSITIVE  SIGNS   Despite  the  incredible  declines  in  reef  health  witnessed  since  the  inception  of  the  TCRMP   in  2001,  there  are  many  positive  signs  for  the  USVI  that  should  be  highlighted.    These   EXECUTIVE  SUMMARY     17   successes  offer  lessons  that  can  be  applied  to  troubled  reefs  and  may  indicate  refuge   areas  where  we  might  “double-­‐down”  on  current  management  strategies.   Reef  Refuges.    The  USVI  is  blessed,  perhaps  uniquely  for  the  Caribbean,  with  extensive   areas  of  deep  bank  and  slope  reefs  that  may  be  buffered  from  the  direct  impacts  of   climate  change  and  local  pressures.    The  mesophotic  (pronounced:  me-­‐zo-­‐photik;   meaning;  “middle-­‐light”)  reefs  of  the  USVI  are  the  best  developed  in  the  Caribbean  from   what  is  currently  known.    Mesophotic  Coral  Ecosystem  (MCE)  bank  reefs  with  high   populations  of  star  corals  (Orbicella  spp.),  which  have  recently  been  proposed  for  listing   as  endangered  on  the  United  States  Endangered  Species  List  (NOAA  2012),  form   extensive  tracts  on  the  south  shelf  of  St.  John  and  St.  Thomas,  from  the  British  Virgin   Islands  to  Vieques,  Puerto  Rico.    Well-­‐formed,  but  patchier  mesophotic  boulder  coral   reefs  also  form  on  the  Lang  Bank,  St.  Croix  and  the  northern  Puerto  Rican  Shelf.    During   the  2005  bleaching  event,  where  shallow  water  reefs  lost  50%  of  coral  cover,  MCE   studied  by  the  TCRMP  hardly  bleached  and  lost  a  more  modest  20%  coral  cover.    Thus,   there  is  hope  that  these  reefs  will  serve  as  refuges  for  corals  during  a  time  of  increasing   ocean  temperatures.   In  federal  waters  some  of  these  areas  are  wholly  or  partly  protected  from  fishing  of   ecologically  important  species  that  help  maintain  reef  health.    These  include  the  Red   Hind  Marine  Conservation  District  (est.  1999),  the  Grammanik  Bank  Seasonally  Closed   Area  (est.  2005),  and  the  Lang  Bank  Red  Hind  Seasonally  Closed  Area  (est.  1993).     However,  extensively  developed  mesophotic  reef  in  unprotected  territorial  waters  also   exist  near  the  island  of  French  Cap  and  Sail  Rock,  St.  Thomas  District.    It  is  important  that   these  areas  are  identified,  their  threats  assessed,  and  they  are  incorporated    into  the   territorial  and  federal  management  planning  process.   Rebounding  Fisheries  Species.  There  are  positive  signs  of  recovery  for  certain  fish  species   in  some  areas.    At  the  Grammanik  Bank  grouper  spawning  aggregation  site  there  have   EXECUTIVE  SUMMARY         18     been  increasing  numbers  of  Nassau  grouper  present  for  annual  spawning  (Kadison  et  al.   2010,  Jackson  et  al.  2014)  and  a  red  hind  aggregation  in  the  Red  Hind  Marine   Conservation  District  (MCD)  has  dramatically  rebounded  (Nemeth  2005).    Red  hind   caught  in  the  fishery  on  the  south  side  of  St.  Thomas  are  more  numerous  and  larger  (D.   Olsen,  pers.  comm.).    It  is  also  the  impression  of  the  authors  that  stocks  of  grouper  and   snapper  are  increasing  in  the  MCD,  although  TCRMP  measurements  are  confounded  to   some  degree  by  the  rotating  array  of  aggregating  fishes.    Other  territorial  and  federal   closed  areas  in  St.  Croix,  St.  John,  and  St.  Thomas  are  more  recently  established  and  may   not  show  effects  for  several  years.    In  2011  the  TCRMP  recorded  the  first  ever  sightings  of   two  Nassau  grouper  in  St.  Croix,  a  positive  sign.  No  Nassau  grouper  were  observed  in   2012  unfortunately.    For  species  that  are  completely  protected  from  fishing  (Nassau   grouper  and  blue,  midnight,  and  rainbow  parrotfish),  educational  campaigns  for   recreational  and  commercial  fisherman  are  critical,  as  awareness  of  regulations  appears   to  be  lacking  (Authors,  unpub.  obs.).   Land-­‐based  source  of  pollu,on.    While  development  of  steep  island  slopes  has  continued   despite  current  regulations  intended  to  prevent  sediments  from  entering  nearshore   waters,  research  has  identified  key  targets  for  restoration  and  some  effective  habitat   restoration  best-­‐management  practices.    Results  from  TCRMP  research  suggest  that  there   are  certain  levels  of  silt-­‐laden  terrestrial  run-­‐off  that  are  damaging  to  corals,  providing  a   target  for  reductions  of  sediment  in  the  marine  environment.    Unpaved  road  segments   have  been  implicated  as  the  worst  culprits  in  the  production  of  sediment-­‐laden  run-­‐off   (Ramos-­‐Scharrón  and  MacDonald  2007b)  and  this  provides  a  clear  target  for  where   management  can  be  most  effectively  applied.    Restoration  of  watersheds  has  shown  that   implementation  of  best-­‐management  practices  and  control  structures  can  be  effective  in   reducing  sedimentation.    For  example,  the  American  Recovery  and  Reinvestment  Act   project  “USVI  Coastal  Habitat  Restoration  Through  Watershed  Stabilization”  showed   EXECUTIVE  SUMMARY     19   promising  results  (Virgin  Islands  Resource  Conservation  and  Development  Council;  P.I.   M.  Taylor).   This  report  presents  results  of  the  12th  year  of  monitoring  on  reefs  surrounding  St.  Croix,   St.  John,  and  St.  Thomas  (years  2001-­‐2012).    Monitoring  sites  were  distributed  across  the   insular  platform  in  depths  from  5  to  63  m  (16  –  220’)  in  an  effort  to  capture  the  diversity   of  reef  types  present  in  the  Virgin  Islands.  Long-­‐term  data  is  presented  from  33  sites.     While  not  exhaustive,  the  TCRMP  is  generally  representative  of  the  geographic  areas  and   variety  of  reef  types  in  the  USVI.    Digital  video  and  diver  surveys  were  used  to  quantify   benthic  cover  and  coral  health  at  14  permanent  sites  surrounding  the  island  of  St.  Croix   and  19  permanent  sites  on  the  Puerto  Rican  Shelf  surrounding  the  island  of  St.  John  and   St.  Thomas.    In  addition,  at  32  of  these  sites  sea  urchin  density  and  fish  community   structure  were  evaluated.  This  report  presents  data  from  a  major  expansion  of  coral  reef   monitoring  sites.   RESEARCH  HIGHLIGHTS         20     Research  Highlights           SPECIES-­‐SPECIFIC  RESPONSES  TO  BLEACHING     21   Bleaching  Resistant  Species  in  the  Caribbean  and  Implications   for  Coral  Reef  Management   TCRMP  research  has  uncovered  new  information  on  the  response  of  Caribbean  corals  to   thermal  stress  events  that  has  high  relevance  for  management  and  was  recently   published  in  the  journal  Ecosphere  (Smith  et  al.  2013).    Shallow  reefs  of  the  USVI  were   affected  by  thermal  stress  in  2005  and  2010  when  temperatures  exceeded  a  stress  point   for  many  corals  known  as  the  bleaching  threshold.    The  longer  corals  spend  above  the   bleaching  threshold  and  the  greater  the  temperature  surpasses  the  bleaching  threshold   the  more  likely  corals  are  to  bleach  (Fig.  1),  or  lose  the  pigmented  microalgae  that  live  in   their  cells  and  give  corals  the  lion’s  share  of  their  nutrition.    Weakened  corals  are   susceptible  to  disease  and  direct  mortality.    In  2005  the  temperatures  were  very  high  for   very  long  and  the  majority  of  shallow  water  corals  bleached,  with  a  loss  of  50-­‐60%  of  the   coverage  of  reef  corals  in  the  USVI  (Miller  et  al.  2009).    In  2010  the  temperatures  were  on   their  way  to  surpass  the  heat  stress  in  2005,  but  temperatures  were  cooled  by  the   upwelling  of  deep  water  stimulated  by  the  passage  of  Hurricane  Earl  (August  30th).    Heat   stress  was  less  than  half  that  experienced  in  2010,  with  limited  bleaching,  disease  and   mortality,  often  confined  to   specific  areas  (Brandt  et  al.   2013).   Figure  2.    Bleaching  of  Orbicella   faveolata  and  O.  annularis  at  Flat   Cay,  St.  Thomas  (Nov.  12,  2005).   These  corals  were  affected  by   disease  during  recovery  in  2006   and  lost  tissue.    Most  corals   suffered  partial  mortality  that   removed  over  50%  of  the  living   tissue,  but  left  parts  of  the  colony   alive  and  capable  of  recovery.     RESEARCH  HIGHLIGHTS         22     The  TCRMP  was  able  to  use  its  resources  to  provide  one  of  the  most  comprehensive  data   sets  of  coral  reef  response  to  thermal  stress  and  bleaching  in  the  Caribbean.    One  central   question  to  ask  of  the  data  was  were  the  responses  of  very  different  coral  species  similar   over  the  extreme  and  mild  thermal  events?    We  used  data  from  18  of  our  shallow  water   (<25m/83’  depth)  monitoring  sites  to  look  at  the  response  of  nine  coral  species  for  which   we  had  hundreds  to  thousands  of  observations.    The  response  was  divided  in  to   bleaching  (the  proportion  of  corals  that  bleached  and  the  extent  of  bleaching  on  the   colonies  surface),  disease  (the  proportion  of  corals  that  showed  white  disease  signs),  and   mortality  (the  proportion  of  colonies  that  had  partial  or  total  mortality  and  the  change  in   the  reef  coverage  of  the  species).   We  found  that  there  were  three  distinct  groupings  of  species  that  we  labeled  “types”.     Type  I  had  high  bleaching  and  initial  mortality,  no  subsequent  white  disease,  and  severe   losses  of  cover  (exhibited  by  Agaricia  agaricites  and  branching  Porites  species);  Type  II   had  moderate  bleaching  and  initial  mortality,  high  subsequent  white  disease  prevalence,   and  severe  losses  of  cover  (exhibited  by  Colpophyllia  natans,  and  Orbicella  spp.);  Type  III   had  moderate  to  low  bleaching  and  paling,  low  to  no  subsequent  white  disease,  and  low   to  no  loss  of  cover  (exhibited  by  Diploria  strigosa,  Montastraea  cavernosa,  Porites   astreoides,  and  Siderastrea  siderea).   The  biggest  surprise  was  that  a  group  of  species  (Type  III)  was  almost  entirely  resistant   to  bleaching  induced  mortality.    These  species  may  become  progressively  more  dominant   on  coral  reefs  of  the  Caribbean  with  increasing  frequency  and  severity  of  coral  bleaching   events.    In  contrast,  the  Type  II  species,  including  main  reef  building  species  in  the   Caribbean,  Orbicella  spp.,  was  only  moderately  affected  by  bleaching  across  our  sites,  but   was  highly  susceptible  to  disease  after  the  bleaching  event.    However,  for  thermally   sensitive  Type  I  and  II  species  partial  mortality  was  much  more  common  than  whole   colony  mortality  and  the  surviving  tissues  may  aid  in  recovery.   SPECIES-­‐SPECIFIC  RESPONSES  TO  BLEACHING     23   RECOMMENDATIONS   The  findings  of  our  research  have  very  important  implications  for  localized  management   with  regards  to  thermal  stress  that  includes  which  coral  species  do  not  need  a  lot  of   active  management  and  which  corals  should  be  managed  and  where  management  might   be  most  effective.   Strategy  #1.    Do  not  expend  a  lot  of  effort  to  protect  Type  III  species,  as  they  will  likely   weather  future  thermal  stress  events  quite  well.    These  species  also  tend  to  be  ones  that   are  quite  resistant  to  other  localized  stressors,  such  as  sedimentation.    Type  III  species   will  persist  through  at  least  the  first  half  of  the  21st  century  and  will  likely  become  more   dominant  in  reef  systems.    However,  they  may  not  increase  in  abundance  sufficiently  to   replace  the  species  lost  to  thermal  stress.    Hence,  even  with  persistence,  ecological  roles   played  by  reefs,  such  as  the  provision  of  nursery  and  adult  habitat  for  fishes  will  likely   degrade.   Strategy  #2.    Stress  local  management  actions  that  promote  the  regrowth  of  surviving   coral  tissues.    These  include  the  usual  actions,  such  as  limiting  land-­‐based  sources  of   pollution  and  sediments  and  reducing  fishing  that  affects  populations  of  herbivorous   fishes  and  urchins  that  consume  seaweeds  that  compete  with  coral  for  space.    As  an   example,  the  highly  thermally  sensitive  Agaricia  agaricites  is  recovering  after  2005  from   tissue  fragments  in  reefs  with  low  land  based  sources  of  pollution  and  low  seaweed   abundance  (e.g.,  Flat  Cay),  but  not  at  reefs  that  are  clearly  still  being  impacted  by  local   stressors  (e.g.,  Fish  Bay).   Strategy  #3.    Large  Orbicella  spp.,  some  many  hundreds  of  years  old,  were  mostly,  but  not   completely,  killed  in  2005  (Fig.  2).    These  corals  are  akin  to  the  giant  sequoia  trees  of   central  California  that  are  long-­‐lived  and  virtually  irreplaceable.    The  fact  that  the   centuries  old  genotypes  are  hanging  on  in  USVI  reefs  is  cause  for  hope  and  action.    Every   effort  should  be  made  to  protect  these  recovering  ancients,  including  education  and   RESEARCH  HIGHLIGHTS         24     active  restoration.    As  for  the  latter,  restoration  of  Orbicella  spp.  has  not  yet  been   attempted  in  the  USVI  to  our  knowledge.    However,  the  fact  that  un-­‐eroded  large   skeletons  still  remain  intact  provides  an  opportunity  for  replantation  of  fragments  that   could  re-­‐sheet  old  skeletons,  short-­‐circuiting  the  recovery  process  and  protecting   essential  habitat.    This  area  is  very  ripe  for  research  into  effective  restoration  strategies.   Figure  3.    The  multi-­‐ faceted  response  of   Orbicella  spp.  to  the  2005   bleaching  event.   Corals  were  moderately  to   severely  bleaching  in  2005   and  then  were  affected  by   white  disease  in  2006.    As   an  example  of  the   potential  for  active   management,  a  colony  at   Savana  Is.,  St.  Thomas  that   is  hundreds  of  years  old   was  heavily  bleached  in   2005  (top  left).    This   colony  was  not  entirely   killed  (bottom  left)  and  by   2011  small  tissue  areas   (pink  coloring  in  bottom   right)  were  recovering   over  the  skeleton.    The   process  is  very  slow  and   might  be  aided  by   restoration  that  targets   these  ancient  corals  still   extant  in  USVI  reefs.     Images  taken  from  Smith   et  al.  2013.   INTRODUCTION     25   Introduction   The  U.S.  Virgin  Islands  consists  of  three  large  islands,  St.  Thomas,  St.  John  and  St.  Croix,   and  numerous  smaller  islands  surrounded  by  a  diverse,  tropical  marine  environment  that   includes  coral  reefs,  seagrass  beds,  and  mangrove  forests  (Fig.  4).    The  islands  of  St.   Thomas  and  St  John  lie  on  the  Puerto  Rican  Shelf,  an  extensive  shallow  water  platform   that  connects  them  to  Puerto  Rico  to  the  west  and  the  British  Virgin  Islands  to  the  east.     Sixty-­‐five  kilometers  to  the  south  of  St.  Thomas  and  St.  John  and  separated  by  the   Anegada  Passage  and  the  Virgin  Islands  Trough  (over  3,000  m  deep),  St.  Croix  lies  on  an   isolated  platform.    This  forms  an  effective  barrier  to  the  migration  of  coral  reef  fishes  and   invertebrates.    The  coral  reefs  of  the  Virgin  Islands  represent  a  wide  range  of   characteristic  coral  reef  habitats  of  the  Caribbean,  including  patch  reefs,  fringing  reefs,   barrier  reefs,  shelf  reefs,  and  extensive  bank  and  slope  mesophotic  coral  reef  ecosystems.     Tourism  drives  the  economy  of  the  Virgin  Islands,  famous  for  white  sand  beaches  that   give  way  to  clean,  clear  marine  waters.    The  Virgin  Islands  are  ideal  for  sailing  because  of   the  persistent  trade  winds  and  the  numerous  bays  that  provide  protected  anchorages.     The  diverse  marine  life  of  the  coral  reefs  and  other  habitats  attracts  thousands  of  skin   and  scuba  divers  each  year.    Sportfishing  on  charter  boats  and  private  vessels  also  makes   an  important  contribution  to  the  economy.   In  addition  to  their  tourist  appeal,  the  coral  reefs  and  other  habitats  in  the  Virgin  Islands   are  essential  to  the  lives  of  hundreds  of  thousands  of  species  including  economically   important  queen  conch,  whelk,  spiny  lobster,  snapper  and  grouper.  Over  three  hundred   full-­‐time  or  part-­‐time  commercial  fishermen  fish  in  territorial  and  federal  waters   surrounding  all  three  islands  (Tobias  1997).    Recreational  and  artisanal  fishing  is  a   frequent  activity  and  is  likely  to  have  a  significant  impact  on  nearshore  fish  populations,   but  there  exists  very  limited  data  on  species  composition  and  spatial  distribution  of   annual  catches  (Authors,  personal  observation).    In  tough  economic  times  and  after   INTRODUCTION         26     natural  disasters,  fishing  is  an  important  means  of  supplemental  income  or  extra  protein   for  many  people.   Over  the  last  few  decades,  major  hurricanes,  coral  disease  outbreaks  and  mass  coral  reef   bleaching  have  caused  extensive  coral  mortality  to  the  coral  reefs  surrounding  the  Virgin   Islands  (Gladfelter  1982,  Edmunds  and  Witman  1991,  Rogers  et  al.  1991,  Rothenberger   et  al.  2008,  Woody  et  al.  2008,  Miller  et  al.  2009).    Recovery  from  these  natural   disturbances  is  hindered  by  a  multitude  of  human  impacts  that  affect  coral  reefs,  such  as   overfishing  of  ecologically  important  species,  physical  damage  to  reef  structure,  and   pollution  (Hatcher  1984,  Pastorok  and  Bilyard  1985,  Rogers  and  Garrison  2001,  Mumby   2006,  Mumby  et  al.  2006,  Mumby  and  Harborne  2010).    Moreover,  rapid  development  of   steep  island  slopes  has  dramatically  increased  soil  erosion  and  sedimentation  into   nearshore  waters  (Brooks  et  al.  2007,  Gray  et  al.  2008,  Smith  et  al.  2008),  particularly   below  unpaved  road  surfaces  (Anderson  and  Macdonald  1998,  Ramos-­‐Scharrón  and   MacDonald  2007a).  Chronic  sedimentation  affects  the  abundance  and  diversity  of  corals   and  other  reef  organisms,  increases  coral  stress  and  susceptibility  to  diseases  and   bleaching,  and  reduces  the  ability  of  corals  and  other  reef  organisms  to  recover  and   regenerate  after  natural  disturbances  such  as  hurricanes  (Acevedo  and  Morelock  1988,   Rogers  1990,  Nemeth  and  Sladeck  Nowlis  2001,  Fabricius  2005).    The  first  sightings  of   the  invasive  Indo-­‐Pacific  lionfish  (Pterois  volitans)  occurred  in  the  US  Virgin  Islands  in   2009.    This  predator  has  the  ability  to  dramatically  alter  coral  reef  fish  community   structure  (Cote  and  Maljkovic  2010)  and  these  alterations  may  have  additional,  indirect   impacts  on  benthic  communities  (Albins  and  Hixon  2011).   High  thermal  stress  and  coral  bleaching  events  affected  the  northeastern  Caribbean  in   2005  and  2010,  but  these  events  had  contrasting  signatures  in  the  United  States  Virgin   Islands.    The  year  2005  was  the  most  severe  high  sea  surface  temperature  (SST)  event  on   record  for  the  northeastern  Caribbean  (Eakin  et  al.  2010).    In  the  Virgin  Islands  a  peak  of   INTRODUCTION     27   10.25  Degree  Heating  Weeks  (DHW)  was  registered  from  satellite  SST  records  (NOAA   2012)  and  a  period  of  approximately  59  days  above  the  local  bleaching  threshold  of   29.5°C  (Aug.  20  –  Oct.  18);  a  level  of  thermal  stress  accumulation  associated  with  severe   coral  bleaching  and  some  mortality.    The  warm  season  of  2010  started  as  warm  or   warmer  than  2005,  with  the  bleaching  threshold  surpassed  for  21  days  between  August   12  and  September  2.    In  a  clear  example  of  ameliorative  storm  cooling  (Manzello  et  al.   2007),  the  passing  of  the  storm  center  of  Hurricane  Earl  on  August  30th,  approximately   100  km  to  the  northeast  of  the  St.  Thomas-­‐St.  John,  caused  a  rapid  decline  in  SST’s  below   the  bleaching  threshold  to  29.3°C,  and  then  from  October  5  -­‐  8,  the  passage  of  Hurricane   Otto  caused  windy  and  cloudy  weather  that  further  reduced  SST  below  29.1°C.    Total   DHW  accumulated  in  2010  began  to  decrease  after  the  beginning  of  October,  when  it  had   reached  5.1  DHW,  a  level  associated  with  some  bleaching  and  limited  mortality.   Most  research  around  the  Virgin  Islands  has  focused  on  fringing  reefs  (5  –  30  m  depth)   located  along  the  shoreline  of  the  three  main  islands,  St.  Thomas,  St.  John,  and  St.  Croix.     In  contrast,  very  little  information  exists  for  offshore  and  deeper  reef  systems,  which  can   be  quite  extensive.    Surrounding  St.  Thomas  and  St.  John,  these  other  reef  systems   include  mid-­‐shelf  reefs  (5  –  30  m  depth)  located  2  to  10  km  from  the  shore  of  the  main   islands  and  mesophotic  reefs  (>30  m  depth)  located  from  0.5  to  15  km  offshore  along  the   edge  of  the  insular  platform  (Armstrong  et  al.  2002,  Herzlieb  et  al.  2005,  Armstrong  et  al.   2006,  Armstrong  2007,  Menza  et  al.  2007,  Menza  et  al.  2008,  Nemeth  et  al.  2008,  Smith  et   al.  2010a).    Distance  from  shore  may  be  a  factor  in  the  historical  degeneration  of  coral   reef  systems  in  the  Virgin  Islands  (Herzlieb  et  al.  2005,  Calnan  et  al.  2008,  Smith  et  al.   2008).    A  systematic  approach  to  investigating  these  cross-­‐shelf  coral  reef  systems  allows   us  to  evaluate  the  variable  impacts  and  synergistic  effects  of  natural  impacts  and  human-­‐ induced  stress  that  influence  the  decline  or  recovery  of  Caribbean  coral  reef  systems.     The  first  two  years  of  this  project  (2001  and  2002)  concentrated  on  the  fringing  reefs   surrounding  St.  Croix.    In  2003,  monitoring  continued  at  St.  Croix  reefs  and  began  at  reef   INTRODUCTION         28     systems  distributed  across  the  insular  platform  surrounding  St.  Thomas.  In  2004,  2005   and  2006  monitoring  continued  at  reefs  surrounding  both  islands,  with  additional  reefs   surrounding  St.  Thomas  added  in  2004,  2005,  and  2011.    Mesophotic  coral  reef   monitoring  sites  were  added  to  St.  Croix  during  the  2008  and  2009  monitoring,  as  well  as   an  additional  monitoring  site  in  the  St.  Croix  East  End  Marine  Park.    In  2011,  the  TCRMP   also  expanded  to  include  sites  established  under  separate  funding  that  will  be  continued   in  the  core  TCRMP  monitoring  activities  funded  by  USVI  DPNR  and  NOAA  CRCP.   OBJECTIVES  FOR  MONITORING  CORAL  REEFS   Effective  management  is  necessary  to  maintain  the  resources  in  the  territorial  and   federal  waters  of  the  Virgin  Islands  in  an  ecologically  and  economically  sustainable   manner.    Monitoring  programs  are  essential  for  successful  management  because  they   provide  managers  with  fundamental  information  with  which  to  make  and  reinforce   decisions.    Standards  for  resource  protection  can  be  measured  by  comparison  to  baseline   data  established  by  monitoring.    Monitoring  also  provides  the  means  to  assess  the  status   and  trends  of  ecological  resources,  allowing  managers  to  determine  the  effectiveness  of   current  management  and  to  develop  effective  management  plans  for  the  future.    The   Territorial  Coral  Reef  Monitoring  Program  monitors  the  condition  of  coral  reefs   throughout  the  U.S.  Virgin  Islands  and  provides  key  information  to  better  manage  these   ecosystems.  This  report  presents  monitoring  results  from  2001-­‐2012  in  St.  Croix  and   from  2003-­‐2012  in  St.  Thomas.    For  both  islands,  temporal  changes  from  year  to  year  in   the  conditions  of  the  reef  communities  were  assessed.       INTRODUCTION     29   Figure  4.    Locations  of  Territorial  Coral  Reef  Monitoring  Sites  in  the  US  Virgin  Islands,  2008-­‐ 2010.Boundaries  indicate  federal  and  territorial  marine  protected  areas.